Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UCEC | rs62012010 | chr15:82511576 | T/C | 2.82E-7 | 124 | 14.88 | 11.53 | 11.37 | KM Plot |
UCEC | rs62012011 | chr15:82517458 | A/G | 2.82E-7 | 124 | 14.88 | 11.53 | 11.37 | KM Plot |
UCEC | rs62012046 | chr15:82529165 | G/A | 2.65E-7 | 125 | 14.88 | 10 | 11.37 | KM Plot |
UCEC | rs62012047 | chr15:82529193 | G/A | 2.65E-7 | 125 | 14.88 | 10 | 11.37 | KM Plot |
UCEC | rs62012049 | chr15:82530063 | C/T | 2.65E-7 | 125 | 14.88 | 10 | 11.37 | KM Plot |
UCEC | rs62012056 | chr15:82539619 | A/G | 2.82E-7 | 124 | 14.88 | 13.07 | 8.1 | KM Plot |
UCEC | rs62012059 | chr15:82544010 | A/C | 2.27E-5 | 123 | 14.88 | 13.07 | 4.88 | KM Plot |
UCEC | rs62013461 | chr15:82544379 | C/A | 2.27E-5 | 123 | 14.88 | 13.07 | 4.88 | KM Plot |
UCEC | rs62135245 | chr2:48828099 | C/G | 2.12E-6 | 122 | 14.78 | 14.1 | 6.33 | KM Plot |
UCEC | rs62137477 | chr2:48833054 | G/A | 2.16E-5 | 124 | 14.78 | 13.33 | 11.17 | KM Plot |
UCEC | rs62137481 | chr2:48834296 | C/T | 2.87E-9 | 124 | 14.03 | 15.17 | 11.32 | KM Plot |
UCEC | rs62302366 | chr4:82419478 | C/T | 3.85E-6 | 125 | 13.35 | 17.08 | 6.77 | KM Plot |
UCEC | rs6677411 | chr1:213036987 | C/T | 7.23E-8 | 122 | 14.65 | 12.17 | 2.38 | KM Plot |
UCEC | rs6679775 | chr1:213068985 | A/G | 1.13E-7 | 124 | 14.65 | 12.17 | 2.38 | KM Plot |
UCEC | rs6697126 | chr1:213070572 | G/A | 1.13E-7 | 124 | 14.65 | 12.17 | 2.38 | KM Plot |